Brotherhood Winery was started by John Jaques, who deeded it in 1858 to his three sons, John Jr., Oren, and Charles, who later renamed it "Jaques Brothers' Winery". In 1886, James M. Emerson and his son, Edward R., acquired the winery from Charles, the last surviving Jaques brother.

The Emersons renamed the operation "Brotherhood" and expanded its facilities to include the single remaining original building on the winery's property, as well as adding large underground winemaking facilities. Edward wrote the book The Story of the Vine while in ownership of Brotherhood.

The winery remained in operation during Prohibition as it produced sacramental wine for the Catholic Church. New ownership came in 1921 with Louis Farrell and his son Louis Jr. The Farrells owned the winery until 1947, when both the father and son died in close succession. Control of the winery passed to three Farrell cousins. Francis Farrell was the cousin who ran the vineyard through the World War II era. An expansion included visitor tour facilities and recognition for award-winning wines in regional wine competitions.

The most recent change of ownership occurred in 1987 when Cesar Baeza purchased the winery. Baeza established vineyards on Long Island during the 1990s. The cabernet sauvignon and merlot planted there and produced into wine are standouts on their sales list.

According to wikipedia